MOLECULAR PHYLOGENY OF THE HETEROTROPHIC DINOFLAGELLATES,PROTOPERIDINIUM, DIPLOPSALIS AND PREPERIDINIUM (DINOPHYCEAE), INFERRED FROM LARGE SUBUNIT rDNA1

The genera Protoperidinium Bergh, Diplopsalis Bergh, and Preperidinium Mangin, comprised of species of marine, thecate, heterotrophic dinoflagellates in the family Protoperidinaceae Balech, have had a confused taxonomic history. To elucidate the validity of morphological groupings within the Protoperidinium and diplopsalids, and to determine the evolutionary relationships between these and other dinoflagellates, we undertook a study of molecular phylogeny using the D1–D3 domains of the large subunit (LSU) of the rDNA. Based on morphology, the 10 Protoperidinium species examined belonged to three subgenera and five morphological sections. Two diplopsalid species were also included. Single‐cell PCR, cloning, and sequencing revealed a high degree of intraindividual sequence variability in the LSU rDNA. The genus Protoperidinium appeared to be recently divergent in all phylogenetic analyses. In maximum parsimony and neighbor joining analyses, Protoperidinium formed a monophyletic group, evolving from diplopsalid dinoflagellates. In maximum likelihood and Bayesian analyses, however, Protoperidinium was polyphyletic, as the lenticular, diplopsalid heterotroph, Diplopsalis lenticula Bergh, was inserted within the Protoperidinium clade as basal to Protoperidinium excentricum (Paulsen) Balech, and Preperidinium meunieri (Pavillard) Elbrächter fell within a separate clade as a sister to the Oceanica and Protoperidinium steidingerae Balech. In all analyses, the Protoperidinium were divided into two major clades, with members in the Oceanica group and subgenus Testeria in one clade, and the Excentrica, Conica, Pellucida, Pyriforme and Divergens sections in the other clade. The LSU rDNA molecular phylogeny supported the historical morphologically determined sections, but not a simple morphology based model of evolution based on thecal plate shape.     

米槠和杉木人工林土壤呼吸及其组分分析

区分森林土壤呼吸组分是了解生态系统碳循环的重要环节。该文以福建省三明市格氏栲自然保护区米槠(Castanopsis carlesii)人工林和邻近的杉木(Cunninghamia lanceolata)人工林为研究对象, 于2012年8月至2013年7月, 采用LI-8100开路式土壤碳通量系统, 通过挖壕沟方法, 测定了土壤呼吸及异养呼吸的速率, 同时测定了5 cm深处的土壤温度和0-12 cm深处的土壤含水量。利用指数模型和双因素模型, 分析土壤呼吸及其组分与土壤温度和土壤含水量的关系, 同时计算了土壤呼吸各组分在土壤呼吸中所占的比例, 并分析了不同森林类型对土壤呼吸及其组分的影响。结果表明: 米槠人工林和杉木人工林土壤呼吸及其组分的季节变化显著, 均呈单峰型曲线, 与5 cm深处的土壤温度呈极显著正相关关系。土壤温度可以分别解释米槠人工林土壤呼吸、自养呼吸和异养呼吸变化的70.3%、73.4%和58.2%, 可以解释杉木人工林土壤呼吸、自养呼吸和异养呼吸变化的77.9%、65.7%和79.2%。土壤呼吸及其组分与土壤含水量没有相关关系。米槠和杉木人工林自养呼吸的年通量分别为4.00和2.18 t C·hm^-2·a^-1, 占土壤呼吸年通量的32.5%和24.1%; 异养呼吸年通量分别为8.32和6.88 t C·hm^-2·a^-1, 分别占土壤呼吸年通量的67.5%和75.9%, 米槠人工林土壤呼吸及其组分的年通量都大于杉木人工林。     

Carbon balance assessment of a Belgian winter wheat crop (Triticum aestivum L.)

The carbon balance of a winter wheat crop in Lonzée, Belgium, was assessed from measurements carried out at different spatial and temporal scales between November 2004 and August 2005. From eddy covariance measurements, the net ecosystem exchange was found to be ?0.63 kg C m^?2 and resulted from the difference between gross primary productivity (GPP) (?1.58 kg C m^?2) and total ecosystem respiration (TER) (0.95 kg C m^?2). The impact of the u_* threshold value on these fluxes was assessed and found to be very small. GPP assessment was partially validated by comparison with an estimation scaled up from leaf scale assimilation measurements. Soil respiration (SR), extrapolated from chamber measurements, was 0.52 kg C m^?2. Net primary productivity, assessed from crop sampling, was ?0.83 kg C m^?2. By combining these fluxes, the autotrophic and heterotrophic components of respiration were deduced. Autotrophic respiration dominated both TER and SR. The evolution of these fluxes was analysed in relation to wheat development.     

Biodegradation of nonylphenol ethoxylates by Bacillus sp. LY capable of heterotrophic nitrification

Biodegradation of nonylphenol ethoxylates (NPEOs) by Bacillus sp. LY, with heterotrophic nitrification ability was investigated. The results showed that NPEOs were readily degraded by Bacillus sp. LY with more than 80% of the total NPEOs being removed within 7 days. Heterotrophic nitrogen removal occurred simultaneously during the biodegradation period of NPEOs. NPEOs were biodegraded through a nonoxidative pathway, through which NPEOs were degraded via sequential removal of ethoxyl units to the nonylphenol. To the authors' knowledge, it is the first report on the biodegradation of NPEO contaminants by a microorganism capable of heterotrophic nitrogen removal.     

Quantitative aspects of heterogeneity in soil organic matter dynamics in a cool-temperate Japanese beech forest: a radiocarbon-based approach

Soil is the largest carbon reservoir in terrestrial ecosystems; it stores twice as much carbon as the atmosphere. It is well documented that global warming can lead to accelerated microbial decomposition of soil organic carbon (SOC) and enhance the release of CO₂ from the soil to the atmosphere; however, the magnitude and timing of this effect remain highly uncertain due to a lack of quantitative data concerning the heterogeneity of SOC biodegradability. Therefore, we sought to identify SOC pools with respect to their specific mean residence times (MRTs), to use those SOC pools to partition soil respiration sources, and to estimate the potential response of the pools to warming. We collected surface soil and litter samples from a cool-temperate deciduous forest in Japan, chemically separated the samples into SOC fractions, estimated their MRTs based on radiocarbon (¹⁴C) isotope measurements, and used the data to construct a model representing the soil as a complex of six SOC pools with different MRT ranges. We estimate that a minor, fast-cycling SOC pool with an MRT of less than 10 years (corresponding to the O horizon and recognizable plant leaf fragments in the A1 horizon) is responsible for 73% of annual heterotrophic respiration and 44% of total soil respiration. However, the predicted response of these pools to warming demonstrates that the rate of SOC loss from the fast-cycling SOC pool diminishes quickly (within several decades) because of limited substrate availability. In contrast, warming will continue to accelerate SOC loss from slow-cycling pools with MRTs of 20–200 years over the next century. Although using a ¹⁴C-based approach has drawbacks, these estimates provide quantitative insights into the potential importance of slow-cycling SOC dynamics for the prediction of positive feedback to climate change.     

Water availability controls microbial temperature responses in frozen soil CO2 production

Soil processes in high-latitude regions during winter are important contributors to global carbon circulation, but our understanding of the mechanisms controlling these processes is poor and observed temperature response coefficients of CO₂ production in frozen soils deviate markedly from thermodynamically predicted responses (sometimes by several orders of magnitude). We investigated the temperature response of CO₂ production in 23 unfrozen and frozen surface soil samples from various types of boreal forests and peatland ecosystems and also measured changes in water content in them after freezing. We demonstrate that deviations in temperature responses at subzero temperatures primarily emanates from water deficiency caused by freezing of the soil water, and that the amount of unfrozen water is mainly determined by the quality of the soil organic matter, which is linked to the vegetation cover. Factoring out the contribution of water limitation to the CO₂ temperature responses yields response coefficients that agree well with expectations based on thermodynamic theory concerning biochemical temperature responses. This partitioning between a pure temperature response and the effect of water availability on the response of soil CO₂ production at low temperatures is crucial for a thorough understanding of low-temperature soil processes and for accurate predictions of C-balances in northern terrestrial ecosystems.     

Response of carbon fluxes to drought in a coastal plain loblolly pine forest

Full accounting of ecosystem carbon (C) pools and fluxes in coastal plain ecosystems remains less studied compared with upland systems, even though the C stocks in these systems may be up to an order of magnitude higher, making them a potentially important component in regional C cycle. Here, we report C pools and CO₂ exchange rates during three hydrologically contrasting years (i.e. 2005–2007) in a coastal plain loblolly pine plantation in North Carolina, USA. The daily temperatures were similar among the study years and to the long‐term (1971–2000) average, whereas the amount and timing of precipitation differed significantly. Precipitation was the largest in 2005 (147 mm above normal), intermediate in 2006 (48 mm below) and lowest in 2007 (486 mm below normal). The forest was a strong C sink during all years, sequestering 361 ± 67 (2005), 835 ± 55 (2006) and 724 ± 55 (2007) g C m^?2 yr^?1 according to eddy covariance measurements of net ecosystem CO₂ exchange (NEE). The interannual differences in NEE were traced to drought‐induced declines in canopy and whole tree hydraulic conductances, which declined with growing precipitation deficit and decreasing soil volumetric water content (VWC). In contrast, the interannual differences were small in gross ecosystem productivity (GEP) and ecosystem respiration (ER), both seemingly insensitive to drought. However, the drought sensitivity of GEP was masked by higher leaf area index and higher photosynthetically active radiation during the dry year. Normalizing GEP by these factors enhanced interannual differences, but there were no signs of suppressed GEP at low VWC during any given year. Although ER was very consistent across the 3 years, and not suppressed by low VWC, the total respiratory cost as a fraction of net primary production increased with annual precipitation and the contribution of heterotrophic respiration (R_h) was significantly higher during the wettest year, exceeding new litter inputs by 58%. Although the difference was smaller during the other 2 years (R_h : litterfall ratio was 1.05 in 2006 and 1.10 in 2007), the soils lost about 109 g C m^?2 yr^?1, outlining their potential vulnerability to decomposition, and pointing to potential management considerations to protect existing soil C stocks.     

The temperature dependence of organic matter decomposition: seasonal temperature variations turn a sharp short‐term temperature response into a more moderate annually averaged response

The temperature dependence of organic matter decomposition is a critically important determinant of any long‐term changes of soil‐carbon stocks in response to global warming. Because of practical experimental constraints, most knowledge of this temperature dependence is based on short‐term studies. These studies generally show a strong temperature dependence of organic matter decomposition. At the same time, many modelling studies, especially global studies, or studies that investigate the effects of climate change, use longer time steps, such as annual. It is investigated here to what extent the use of short‐term temperature dependencies are appropriate, or how they may need to be modified, for application over longer time steps. The work indicated that for global applications, it is critically important to explicitly consider seasonal temperature variations. Across the globe, observed annual mean temperature and the annual temperature range are negatively correlated. Inclusion of this correlation means that the strong short‐term temperature dependence becomes much weaker when data are expressed as annual averages for the temperatures experienced across the globe. For short‐term responses, the temperature dependence of organic matter decomposition is greater at low than high temperature and deviates strongly from an assumption of a constant Q₁₀ across temperature. For annually averaged values, this pattern also weakens, and temperature dependencies change only slightly with temperature. Using short time steps for simulations leads to the expectation of more positive changes (sequestration) in soil carbon especially for cold regions of the globe than would be predicted for simulations at annual time steps without explicit consideration of seasonal temperature variations. These considerations help to reconcile some of the apparent differences in temperature dependencies obtained by different workers using different approaches.     

Incidence of Legionella and heterotrophic bacteria in household rainwater tanks in Azumino,Nagano prefecture,Japan

Many administrative agencies in Japan are encouraging installation of household rainwater‐storage tanks for more effective use of natural rainwater. Water samples were collected periodically from 43 rainwater tanks from 40 households and tested for the presence of Legionella species and the extent of heterotrophic bacteria in Azumino city, Nagano prefecture, Japan. PCR assays indicated the presence of Legionella spp. in 12 (30%) of the 43 tank water samples. Attempts were made to identify correlations between PCR positive samples, topography, pH, chemical oxygen demand (COD), atmospheric temperature and the numbers of heterotrophic bacteria. Between June and October, 2012, the numbers of heterotrophic bacteria in rainwater tanks and the values of COD positively correlated with the presence of Legionella species. In most of the Legionella‐positive cases, heterotrophic bacterial cell counts were >10⁴ CFU/mL. Moreover, Legionella species were less frequently detected when the COD value was >5 mg KMnO₄/L. Therefore, at least in Azumino, Japan between June and October 2012, both heterotrophic bacterial counts and COD values may be considered index parameters for the presence of Legionella cells in rainwater tanks. Much more accumulation of such data is needed to verify the accuracy of these findings.